Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs115847858 | chr1:227578235 | T/C | 6.96E-5 | 176 | 15.4 | 16.45 | 3.9 | KM Plot |
| PAAD | rs115956039 | chr1:227661978 | G/A | 5.58E-13 | 178 | 15.33 | 15.97 | 1.37 | KM Plot |
| PAAD | rs115971954 | chr1:16805453 | G/A | 9.19E-5 | 172 | 15.33 | 15.67 | 3.9 | KM Plot |
| PAAD | rs11598383 | chr10:94180747 | A/C | 8.41E-6 | 176 | 15.13 | 19.87 | 4.38 | KM Plot |
| PAAD | rs116035891 | chr1:227618836 | G/A | 6.46E-5 | 177 | 15.47 | 16.45 | 3.9 | KM Plot |
| PAAD | rs11604372 | chr11:74635400 | C/T | 0.000132 | 177 | 4.27 | 15.43 | 15.57 | KM Plot |
| PAAD | rs116045808 | chr1:227420480 | G/A | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs116077344 | chr2:179019668 | G/T | 4.42E-10 | 176 | 15.82 | 14.33 | 2.2 | KM Plot |
| PAAD | rs116225789 | chr1:227477338 | C/A | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs116274842 | chr1:227368819 | C/T | 3.69E-5 | 177 | 15.53 | 15.43 | 3.9 | KM Plot |
| PAAD | rs116347806 | chr4:2400424 | T/C | 0 | 174 | 0.4 | 16.13 | 15.33 | KM Plot |
| PAAD | rs11634869 | chr15:81566613 | A/T | 2.11E-5 | 177 | 15.57 | 15.72 | 4.62 | KM Plot |
| PAAD | rs116354819 | chr1:227248418 | C/G | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs11637313 | chr15:81567752 | C/A | 4.83E-5 | 176 | 15.57 | 15.72 | 1.37 | KM Plot |
| PAAD | rs116389194 | chr1:227302921 | T/C | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |